Find enriched genes between enrich and input samples

Usage

FindEnrichment(
  object,
  slot = c("sample", "spike_in"),
  norm.method,
  logfc.cutoff = 1,
  p.cutoff = 0.05,
  only.pos = TRUE,
  ...
)

object: An object.
slot: Which slot, one of sample or spike_in.
norm.method: Which normalization method to use for differential analysis, must be one of the methods presented in the selected slot.
logfc.cutoff: Filter genes by at least X-fold difference (log2-scale) between the two groups of samples, default: 1.
p.cutoff: Filter genes by no more than p.cutoff adjusted p-value, default: 0.05.
only.pos: Whether significant differential genes only consider genes with positive fold-change.
...: Additional parameters can be passed to edgeRDE.

updated Enone